Mol, F.N. et al. MRI-Based Head and Neck Tumor Segmentation Using nnU-Net with 15-Fold Cross-Validation Ensemble.Head and Neck Tumor Segmentation for MR-Guided Applications. Conference paper. Springer, 2025, 15273. DOI:10.1007/978-3-031-83274-1_13 (2025).
Jansen, R.L.M. et al., Overexpression of PEX14 results in mistargeting to mitochondria, accompanied by organelle fragmentation and clustering in human embryonic kidney cells. Biochim Biophys Acta Mol Cell Res. 2024, 1871(6):119754. DOI: 10.1016/j.bbamcr.2024.119754.
de Lange, E.M.F. et al., STED super-resolution microscopy unveils the dynamics of Atg30 on yeast Pex3-labeled peroxisomes. iScience, 2024. 8;27(8):110481. DOI:10.1016/j.isci.2024.110481
Richards, F. et al., Rapid internalization of nanoparticles by human cells at the single particle level.ACS Nano, 2023. DOI: 10.1021/acsnano.3c01124
Hurtig, F. et al., The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division.Science Advances, 2023. 9(11), DOI: 10.1126/sciadv.ade5224
Burgers, T.C.Q. & Vlijm, R., Fluorescence-based super-resolution-microscopy strategies for chromatin studies.Chromosoma, 2023. https://doi.org/10.1007/s00412-023-00792-9
Hemmatpour, H., et al., Temperature-responsive and biocompatible nanocarriers based on clay nanotubes for controlled anti-cancer drug release. Nanoscale, 2023. DOI: 10.1039/D2NR06801J
de Lange, E.M.F. & Vlijm, R., Super-resolution imaging of peroxisomal proteins using STED nanoscopy. Methods in Molecular Biology, Springer Nature, 2023. 2643(65-84). DOI: 10.1007/978-1-0716-3048-8_5
Erdel, F., et al., Mouse Heterochromatin Adopts Digital Compaction States without Showing Hallmarks of HP1-Driven Liquid-Liquid Phase Separation.Molecular Cell, 2020. DOI: https://doi.org/10.1016/j.molcel.2020.02.005
Vlijm, R., et al., STED nanoscopy of the centrosome linker reveals a CEP68-organized, periodic rootletin network anchored to a C-Nap1 ring at centrioles. Proc Natl Acad Sci U S A, 2018. 115(10): p. E2246-E2253.
Vlijm, R., et al., The supercoiling state of DNA determines the handedness of both H3 and CENP-A nucleosomes.Nanoscale, 2017. 9(5): p. 1862-1870.
Butkevich, A.N., et al., Hydroxylated Fluorescent Dyes for Live-Cell Labeling: Synthesis, Spectra and Super-Resolution STED.Chemistry, 2017. 23(50): p. 12114-12119.
Kim, S.H., et al., CENP-A and H3 Nucleosomes Display a Similar Stability to Force-Mediated Disassembly.PLoS One, 2016. 11(11): p. e0165078.
Vlijm, R., et al., Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence.Nanoscale, 2015. 7(7): p. 3205-16.
Vlijm, R., et al., Comparing the Assembly and Handedness Dynamics of (H3.3-H4)2 Tetrasomes to Canonical Tetrasomes.PLoS One, 2015. 10(10): p. e0141267.
Vlijm, R., et al., Nucleosome assembly dynamics involve spontaneous fluctuations in the handedness of tetrasomes.Cell Rep, 2015. 10(2): p. 216-25.
Vlijm, R., V.D.T. J, and C. Dekker, Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting.PLoS One, 2015. 10(10): p. e0141576.
Katan, A.J., et al., Dynamics of nucleosomal structures measured by high-speed atomic force microscopy.Small, 2015. 11(8): p. 976-84.
Vlijm, R., et al., NAP1-assisted nucleosome assembly on DNA measured in real time by single-molecule magnetic tweezers.PLoS One, 2012. 7(9): p. e46306.
Patil, A.V., et al., Fabrication and characterization of polymer insulated carbon nanotube modified electrochemical nanoprobes.Nanoscale, 2010. 2(5): p. 734-8.
Burgers, T.C.Q., Mol, F.N. & Vlijm, R., (2022), Dataset of ESCRT-III polymer rings (CdvB, CdvB1 and CdvB2) in wildtype archaea (Sacidocaldarius_DSM639) imaged by (dyMIN) STED nanoscopy, https://doi.org/10.34894/Q6BYSQ, DataverseNL, V1, as used in Hurtig et al..
Other (thesis / abstracts)
Thesis: Vlijm, R., Assembling a single-molecule view on nucleosome dynamics, in Bionanoscience. 2014, Delft University of Technology: Delft. p. 164.
Vlijm, R., et al., STED Nanoscopy of the Centrosome Linker Reveals a CEP68-Organized, Periodic Rootletin Network Anchored to a C-Nap1 Ring at Centrioles.Biophysical Journal, 2018. 114(3): p. 535a. https://doi.org/10.1016/j.bpj.2017.11.2926
Hyun Kim, S., et al., The Handedness of Nucleosomes is Governed by the Supercoiling of DNA.Biophysical Journal, 2016. 110(3): p. 70a. https://doi.org/10.1016/j.bpj.2015.11.440
Vlijm, R., et al., Nucleosome Assembly Dynamics Involve Spontaneous Fluctuations in the Handedness of Tetrasomes.Biophysical Journal, 2015. 108(2): p. 205a. https://doi.org/10.1016/j.bpj.2014.11.1132
Vlijm, R., Y. Dalal, and C. Dekker, Torque Mediated Kinetics of CENP-A Nucleosomes Reveals Resilience to Tension.Biophysical Journal, 2015. 108(2): p. 539a. https://doi.org/10.1016/j.bpj.2014.11.2954
Vlijm, R., et al., Nucleosome Dynamics Involve Spontaneous Fluctuations in the Handedness of Tetrasomes.Biophysical Journal, 2014. 106(2): p. 74a. https://doi.org/10.1016/j.bpj.2013.11.486
Katan, A., et al., Dynamics of NAP1-Assisted Nucleosome Assembly Imaged with High-Speed Atomic Force Microscopy.Biophysical Journal, 2014. 106(2): p. 429a. https://doi.org/10.1016/j.bpj.2013.11.2416
Vlijm, R., et al., NAP1-Assisted Nucleosome Assembly on DNA Measured in Real Time by Single-Molecule Magnetic Tweezers.Biophysical Journal, 2013. 104(2): p. 38a-39a. https://doi.org/10.1016/j.bpj.2012.11.250
Vlijm, R., et al., Real Time Visualization of hRPA Binding to Torsionally Controlled Double-Stranded DNA.Biophysical Journal, 2013. 104(2): p. 73a. https://doi.org/10.1016/j.bpj.2012.11.442
