Publications
2024
Jafarinia,
H., van der Giessen, E., & Onck, P.
R. (2024). C9orf72 polyPR directly binds to various
nuclear transport components. eLife,
12, Article RP89694. https://doi.org/10.7554/eLife.89694
Jafarinia,
H., Van der Giessen, E., & Onck, P.
R. (2024). C9orf72 polyPR interaction with the nuclear
pore complex. Biophysical Journal,
123(20), 3533-3539. https://doi.org/10.1016/j.bpj.2024.08.024
Pramanik,
R., Verstappen, R. W. C. P., & Onck,
P. R. (2024). Computational fluid-structure
interaction in biology and soft robots: A review.
Physics of Fluids, 36(10), Article
101302. https://doi.org/10.1063/5.0226743
Pramanik,
R., Verstappen, R. W. C. P., & Onck,
P. (2024). Nature-inspired miniaturized magnetic soft
robotic swimmers. Applied physics
reviews, 11(2), Article 021312 . https://doi.org/10.1063/5.0189185
Otto,
T. A., Bergsma, T., Dekker,
M., Mouton, S. N., Gallardo,
P., Wolters, J. C., Steen,
A., Onck, P. R., & Veenhoff, L.
M. (2024). Nucleoporin Nsp1 surveils the phase state
of FG-Nups. Cell reports,
43(10), Article 114793. https://doi.org/10.1016/j.celrep.2024.114793
Wang,
T., ul Islam, T., Steur, E., Homan, T., Aggarwal,
I., Onck, P. R., den Toonder, J. M. J., &
Wang, Y. (2024). Programmable metachronal motion of closely
packed magnetic artificial cilia. Lab on a
Chip, 24(6), 1573-1585. https://doi.org/10.1039/d3lc00956d
Adupa,
V., Ustyantseva, E., Kampinga, H.
H., & Onck, P. R. (2024). Tertiary
structure and conformational dynamics of the anti-amyloidogenic
chaperone DNAJB6b at atomistic resolution. Nature
Communications, 15(1), Article 3285. https://doi.org/10.1038/s41467-024-46587-z
Driver,
M. D., Postema, J., & Onck, P. R. (2024).
The Effect of Dipeptide Repeat Proteins on FUS/TDP43-RNA
Condensation in C9orf72 ALS/FTD. The Journal of
Physical Chemistry. B: Materials, Surfaces, Interfaces, &
Biophysical, 128(39), 9405–9417. https://doi.org/10.1021/acs.jpcb.4c04663
2023
Zhang,
S., Hu, X., Li, M., Bozuyuk, U., Zhang, R., Suadiye,
E., Han, J., Wang, F., Onck, P., & Sitti, M.
(2023). 3D-printed micrometer-scale wireless magnetic cilia
with metachronal programmability. Science
Advances, 9(12), Article eadf9462. https://doi.org/10.1126/sciadv.adf9462
Shakibi,
S., Onck, P. R., & Van der Giessen,
E. (2023). A One-Bead-Per-Saccharide (1BPS) Model for
Glycosaminoglycans. Journal of Chemical Theory and
Computation, 19(16), 5491–5502. https://doi.org/10.1021/acs.jctc.3c00238
Klughammer,
N., Barth, A., Dekker, M., Fragasso, A., Onck,
P. R., & Dekker, C. (2023). Diameter Dependence of
Transport through Nuclear Pore Complex Mimics Studied Using Optical
Nanopores. eLife, 12, Article
eLife.87174.1. Advance online publication. https://doi.org/10.7554/eLife.87174.3
Heesink,
G., Marseille, M. J., Fakhree, M. A. A., Driver, M.
D., van Leijenhorst-Groener, K. A., Onck, P.
R., Blum, C., & Claessens, M. M. A. E. (2023).
Exploring Intra- and Inter-Regional Interactions in the IDP
α-Synuclein Using smFRET and MD Simulations.
Biomacromolecules, 24(8),
3680–3688. https://doi.org/10.1021/acs.biomac.3c00404
Shakibi,
S., Onck, P. R., Van, E., & van der
Giessen, E. (2023). Extracellular proteoglycans: A
multiscale computational study. Biophysical
Journal, 122(3 Supplement 1), 420a-421a. https://doi.org/10.1016/j.bpj.2022.11.2279
Pramanik,
R., Verstappen, R. W. C. P., & Onck,
P. R. (2023). Magnetic-field-induced propulsion of
jellyfish-inspired soft robotic swimmers. Physical
Review E, 107, Article 014607. https://doi.org/10.1103/PhysRevE.107.014607
De
Jong, E., Van Der Klok, M. L., Den Toonder, J.
M. J., & Onck, P. R. (2023). Numerical
modeling and quantification of droplet mixing using
mechanowetting. Physics of Fluids,
35(4), Article 043313. https://doi.org/10.1063/5.0143208
Dekker,
M., Van der Giessen, E., & Onck, P.
R. (2023). Phase separation of intrinsically
disordered FG-Nups is driven by highly dynamic FG motifs.
Proceedings of the National Academy of Sciences of the
United States of America, 120(25), Article
e2221804120. https://doi.org/10.1073/pnas.2221804120
Kind,
L., Driver, M., Raasakka, A., Onck, P.
R., Njølstad, P. R., Arnesen, T., & Kursula, P.
(2023). Structural properties of the HNF-1A transactivation
domain. Frontiers in Molecular
Biosciences, 10, Article 1249939. https://doi.org/10.3389/fmolb.2023.1249939
2022
De
Jong, E., Den Toonder, J. M. J., & Onck, P.
R. (2022). Directional droplet transport on switchable
ratchets by mechanowetting. Microfluidics and
Nanofluidics, 26(4), Article 32. https://doi.org/10.1007/s10404-022-02537-z
Zhang,
R., Toonder, J. D., & Onck, P. R. (2022).
Metachronal patterns by magnetically-programmable artificial
cilia surfaces for low Reynolds number fluid transport and
mixing. Soft Matter, 18(20),
3902-3909. https://doi.org/10.1039/d1sm01680f
ul
Islam, T., Wang, Y., Aggarwal, I., Cui,
Z., Eslami Amirabadi, H., Garg, H., Kooi, R.,
Venkataramanachar, B. B., Wang, T., Zhang, S., Onck, P.
R., & den Toonder, J. M. J. (2022). Microscopic
artificial cilia - a review. Lab on a
Chip, 22, 1650-1679 . https://doi.org/10.1039/D1LC01168E
Jafarinia,
H., Van der Giessen, E., & Onck, P.
R. (2022). Molecular basis of C9orf72 poly-PR
interference with the β-karyopherin family of nuclear
transport receptors. Scientific
Reports, 12(1), Article 21324. https://doi.org/10.1038/s41598-022-25732-y
Peng,
W., Sun, K., & Onck, P. (2022).
Structure–property relations of three-dimensional
nanoporous template-based graphene foams. Extreme
Mechanics Letters, 54, Article 101737. https://doi.org/10.1016/j.eml.2022.101737
Fragasso,
A., de Vries, H. W., Andersson, J., van der Sluis, E.
O., van der Giessen, E., Onck, P. R.,
& Dekker, C. (2022). Transport receptor occupancy in
nuclear pore complex mimics. Nano
Research, 15(11), 9689–9703. https://doi.org/10.1007/s12274-022-4647-1
2021
van
der Klok, M., Dekker, M., Van der
Giessen, E., & Onck, P. R. (2021). A
4BPA Coarse-Grained Molecular Dynamics Study on the Aggregation of
Polyglutamine. Biophysical Journal,
120(3 Suppl. 1), 28A-28A. https://doi.org/10.1016/j.bpj.2020.11.428
Fragasso,
A., de Vries, H. W., Andersson, J., van der Sluis, E. O., van
der Giessen, E., Dahlin, A., Onck, P. R., &
Dekker, C. (2021). A designer FG-Nup that reconstitutes the
selective transport barrier of the nuclear pore complex.
Nature Communications, 12(1),
Article 2010. https://doi.org/10.1038/s41467-021-22293-y
Pramanik,
R., Onck, P. R., & Verstappen, R. W.
C. P. (2021). Bi-directional locomotion of a
magnetically-actuated jellyfish-inspired soft robot. In
Advances in Robotics, AIR 2021 - 5th International Conference
of the Robotics Society (pp. 1-5). Article 3478591 (ACM
International Conference Proceeding Series). Association for
Computing Machinery. https://doi.org/10.1145/3478586.3478591
De
Vries, H., Fragasso, A., Otto, T., Klughammer,
N., Andersson, J., Sluis, E. V. D., Steen, A., Dahlin,
A., Veenhoff, L., Dekker, C., Giessen, E. V.
D., & Onck, P. (2021). De Novo
Computational Design of Disordered Fg-Nucleoporins.
Biophysical Journal, 120(3),
29a-30a. https://doi.org/10.1016/j.bpj.2020.11.435
De
Jong, E., Kremer, R., Liu, L., Den Toonder, J. M. J.,
& Onck, P. R. (2021). Mechanowetting drives
droplet and fluid transport on traveling surface waves generated by
light-responsive liquid crystal polymers. Physics
of Fluids, 33(6), Article 063307. https://doi.org/10.1063/5.0050864
Hoogenboom,
B. W., Hough, L. E., Lemke, E. A., Lim, R. Y. H., Onck, P.
R., & Zilman, A. (2021). Physics of the nuclear
pore complex: Theory, modeling and experiment.
Physics Reports. https://doi.org/10.1016/j.physrep.2021.03.003
Driver,
M. D., & Onck, P. R. (2021).
RNA-Protein Interactions in Molecular Life and Health: A
Computational Approach. Biophysical
Journal, 120(3), 81A-81A. https://doi.org/10.1016/j.bpj.2020.11.702
Ren,
Z., Zhang, R., Soon, R. H., Liu, Z., Hu, W.,
Onck, P. R., & Sitti, M. (2021). Soft-bodied
adaptive multimodal locomotion strategies in fluid-filled confined
spaces. Science Advances,
7(27), Article eabh2022. https://doi.org/10.1126/sciadv.abh2022
Jafarinia,
H., Van der Giessen, E., & Onck, P.
R. (2021). The Interaction between Poly-PR Dipeptide
Repeat Proteins and the Nuclear Pore Complex.
Biophysical Journal, 120(3),
285A-285A. https://doi.org/10.1016/j.bpj.2020.11.1829
Zhang,
R., den Toonder, J., & Onck, P. R. (2021).
Transport and mixing by metachronal waves in nonreciprocal
soft robotic pneumatic artificial cilia at low Reynolds
numbers. Physics of Fluids,
33(9), Article 092009. https://doi.org/10.1063/5.0054929
Pappas,
C. G., Liu, B., Marić, I.,
Ottelé, J., Kiani, A., van der Klok,
M. L., Onck, P. R., & Otto, S.
(2021). Two Sides of the Same Coin: Emergence of Foldamers
and Self-Replicators from Dynamic Combinatorial Libraries.
Journal of the American Chemical Society,
143(19), 7388–7393. https://doi.org/10.1021/jacs.1c00788
Ye,
J., Liu, L., Oakdale, J., Lefebvre, J., Bhowmick, S., Voisin, T.,
Roehling, J. D., Smith, W. L., Cerón, M. R., van Ham, J., Bayu
Aji, L. B., Biener, M. M., Wang, Y. M., Biener, J., &
Onck, P. R. (2021). Ultra-low-density digitally
architected carbon with a strutted tube-in-tube structure.
Nature Materials, 20(11), 1498-1505.
https://doi.org/10.1038/s41563-021-01125-w
2020
Zhang,
S., Wang, Y., Onck, P., & den Toonder, J. (2020).
A concise review of microfluidic particle manipulation
methods. Microfluidics and
Nanofluidics, 24(4), Article 24. https://doi.org/10.1007/s10404-020-2328-5
Fragasso,
A., de Vries, H., van der Sluis, E., Van der
Giessen, E., Onck, P. R., & Dekker, C.
(2020). A Designer FG-Nup that Reconstitutes the Selective
Transport Barrier of the Nuclear Pore Complex.
Biophysical Journal, 118(3),
341A-342A. https://doi.org/10.1101/2020.02.04.933994
Zhang,
S., Zuo, P., Wang, Y., Onck, P. R., & den Toonder,
J. M. J. (2020). Anti-Biofouling and Self-Cleaning Surfaces
Featured with Magnetic Artificial Cilia. ACS
Applied Materials & Interfaces, 12(24),
27726–27736. https://doi.org/10.1021/acsami.0c05403
Zhang,
S., Zuo, P., Wang, Y., Onck, P. R., & den Toonder,
J. M. J. (2020). Anti-biofouling surfaces featured with
magnetic artificial cilia. In MicroTAS 2020 - 24th
International Conference on Miniaturized Systems for Chemistry and
Life Sciences (pp. 1001-1002). (MicroTAS 2020 - 24th
International Conference on Miniaturized Systems for Chemistry and
Life Sciences). Chemical and Biological Microsystems Society
.
Zhang,
S., Wang, Y., Onck, P., & den Toonder, J. (2020).
Artificial mini-heart: An internal micropump based on
magnetically actuated artificial cilia that can induce flows in a
microfluidic channel network. In 21st International
Conference on Miniaturized Systems for Chemistry and Life Sciences,
MicroTAS 2017 (pp. 1125-1126). (21st International Conference
on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS
2017). Chemical and Biological Microsystems Society .
Dong,
X., Lum, G. Z., Hu, W., Zhang, R., Ren, Z.,
Onck, P. R., & Sitti, M. (2020). Bioinspired cilia
arrays with programmable nonreciprocal motion and metachronal
coordination. Science Advances,
6(45), Article eabc9323 . https://doi.org/10.1126/sciadv.abc9323
de
Vries, H., Fragasso, A., van der Sluis, E. O., Dekker,
C., Van der Giessen, E., & Onck, P.
R. (2020). Coarse-Grained Modeling of Nuclear Pore
Complex Mimics Comprising Designer FG-Nucleoporins.
Biophysical Journal, 118(3),
342A-343A. https://doi.org/10.1016/j.bpj.2019.11.1906
Zhang,
S., Zhang, R., Wang, Y., Onck, P. R.,
& den Toonder, J. M. J. (2020). Controlled
Multidirectional Particle Transportation by Magnetic Artificial
Cilia. Acs Nano, 14(8),
10313-10323. https://doi.org/10.1021/acsnano.0c03801
Mehta,
K., Peeketi, A. R., Liu, L., Broer, D., Onck, P.,
& Annabattula, R. K. (2020). Design and applications of
light responsive liquid crystal polymer thin films.
Applied physics reviews, 7(4),
Article 041306. https://doi.org/10.1063/5.0014619
Milana,
E., Zhang, R., Vetrano, M. R., Peerlinck, S., De
Volder, M., Onck, P. R., Reynaerts, D., &
Gorissen, B. (2020). Metachronal patterns in artificial cilia
for low Reynolds number fluid propulsion. Science
Advances, 6(49), Article eabd2508. https://doi.org/10.1126/sciadv.abd2508
de
Jong, E., Den Toonder, J. M. J., & Onck, P.
R. (2020). Microfluidic slug transport on
traveling-wave surface topographies by mechanowetting.
Physical review fluids, 5(6),
Article 063604. https://doi.org/10.1103/PhysRevFluids.5.063604
Mehta,
K., Peeketi, A. R., Sol, J. A. H. P., Debije, M. G., Onck, P.
R., & Annabattula, R. K. (2020). Modeling of
surface waves in photo-responsive viscoelastic liquid crystal thin
films under a moving light source. Mechanics of
Materials, 147, Article 103388. https://doi.org/10.1016/j.mechmat.2020.103388
Jafarinia,
H., van der Giessen, E., & Onck, P.
R. (2020). Phase Separation of Toxic Dipeptide Repeat
Proteins Related to C9orf72 ALS/FTD. Biophysical
Journal, 119(4), 843-851. https://doi.org/10.1016/j.bpj.2020.07.005
2019
Rempel,
I. L., Popken, P., Ghavami, A., Mishra, A., Hapsari,
R. A., Wolters, A. H. G., Veldsink, A.
C., Klaassens, M., Meinema, A. C., Poolman,
B., Giepmans, B. N. G., Onck, P.
R., Steen, A., & Veenhoff, L.
M. (2020). Flexible and Extended Linker Domains
Support Efficient Targeting of Heh2 to the Inner Nuclear
Membrane. Structure, 28(2),
185-195.e5. https://doi.org/10.1016/j.str.2019.11.003
Rempel,
I. L., Crane, M. M., Thaller, D. J., Mishra, A., Jansen, D. P. M.,
Janssens, G., Popken, P., Akşit, A., Kaeberlein, M., van
der Giessen, E., Steen, A., Onck, P.
R., Lusk, C. P., & Veenhoff, L. M. (2019).
Age-dependent deterioration of nuclear pore assembly in
mitotic cells decreases transport dynamics.
eLife, 8, Article e48186. https://doi.org/10.7554/eLife.48186
Zhang,
S., Wang, Y., Onck, P. R., & den Toonder, J. M. J.
(2019). Anti-fouling surfaces featured with magnetic
artificial cilia. In 23rd International Conference on
Miniaturized Systems for Chemistry and Life Sciences, MicroTAS
2019 (pp. 233-234). (23rd International Conference on
Miniaturized Systems for Chemistry and Life Sciences, MicroTAS
2019). Chemical and Biological Microsystems Society .
Wang,
Y., de Jong, E., Onck, P. R., & den
Toonder, J. M. J. (2019). Climbing droplets driven by
mechanowetting. In 23rd International Conference on
Miniaturized Systems for Chemistry and Life Sciences, MicroTAS
2019 (pp. 987-988). (23rd International Conference on
Miniaturized Systems for Chemistry and Life Sciences, MicroTAS
2019). Chemical and Biological Microsystems Society .
De
Jong, E., Wang, Y., Den Toonder, J. M. J., & Onck,
P. R. (2019). Climbing droplets driven by
mechanowetting on transverse waves. Science
Advances, 5(6), Article eaaw0914. https://doi.org/10.1126/sciadv.aaw0914
Liu,
L., & Onck, P. R. (2019). Light-driven
topographical morphing of azobenzene-doped liquid crystal polymer
films via tunable photo-polymerization induced diffusion.
Journal of the Mechanics and Physics of
Solids, 123, 247-266. https://doi.org/10.1016/j.jmps.2018.09.021
Zhang,
S., Wang, Y., Onck, P. R., & den Toonder, J. M. J.
(2019). Removal of Microparticles by Ciliated Surfaces-an
Experimental Study. Advanced Functional
Materials, 29(6), Article 1806434. https://doi.org/10.1002/adfm.201806434
Mishra,
A., Sipma, W., Veenhoff, L. M., Van der
Giessen, E., & Onck, P. R. (2019).
The effect of FG-nup phosphorylation on NPC selectivity: A
one-bead-per-amino-acid molecular dynamics study.
International Journal of Molecular Sciences,
20(3), Article 596. https://doi.org/10.3390/ijms20030596
Liu,
L., Broer, D. J., & Onck, P. R. (2019).
Travelling waves on photo-switchable patterned liquid crystal
polymer films directed by rotating polarized light.
Soft Matter, 15(40), 8040-8050. https://doi.org/10.1039/c9sm01594a
2018
Zhang,
S., Wang, Y., Onck, P. R., & Den Toonder, J. M. J.
(2018). Anti-fouling surfaces: Removal of micro-particles by
magnetic artificial cilia. In 22nd International
Conference on Miniaturized Systems for Chemistry and Life Sciences,
MicroTAS 2018 (pp. 1661-1663). (22nd International Conference
on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS
2018; Vol. 3). Chemical and Biological Microsystems Society .
Ketterer,
P., Ananth, A. N., Laman Trip, D. S., Mishra, A.,
Bertosin, E., Ganji, M., van der Torre, J., Onck, P.,
Dietz, H., & Dekker, C. (2018). DNA origami scaffold for
studying intrinsically disordered proteins of the nuclear pore
complex. Nature Communications,
9(1), Article 902. https://doi.org/10.1038/s41467-018-03313-w
Boonstra,
S., Blijleven, J. S., Roos, W. H.,
Onck, P. R., van der Giessen, E., & van
Oijen, A. M. (2018). Hemagglutinin-Mediated Membrane Fusion:
A Biophysical Perspective. Annual Review of
Biophysics, 47. https://doi.org/10.1146/annurev-biophys-070317-033018
Singh,
R. P., & Onck, P. R. (2018). Magnetic field
induced deformation and buckling of slender bodies.
International Journal of Solids and
Structures, 143, 29-58. https://doi.org/10.1016/j.ijsolstr.2018.02.029
Onck,
P. R., & Deshpande, V. S. (2018). Mechanobiology:
The role of mechanics in health and disease.
Extreme Mechanics Letters, 25, 45.
https://doi.org/10.1016/j.eml.2018.10.008
Akhtar,
N., Thomas, P. J., Svardal, B., Almenningen, S., de Jong,
E., Magnussen, S., Onck, P., Fernø, M. A.,
& Holst, B. (2018). Pillars or Pancakes? Self-cleaning
surfaces without coating. Nano
Letters, 18(12), 7509-7514. https://doi.org/10.1021/acs.nanolett.8b02982
Ghavami,
A., Van der Giessen, E., & Onck, P.
R. (2018). Sol-gel transition in solutions of FG-Nups
of the nuclear pore complex. Extreme Mechanics
Letters, 22, 36-41. https://doi.org/10.1016/j.eml.2018.04.006
Ananth,
A. N., Mishra, A., Frey, S., Dwarkasing, A., Versloot,
R., van der Giessen, E., Görlich, D., Onck,
P., & Dekker, C. (2018). Spatial structure of
disordered proteins dictates conductance and selectivity in nuclear
pore complex mimics. eLife,
7, Article 31510. https://doi.org/10.7554/eLife.31510
Liu,
L., & Onck, P. R. (2018). Topographical
changes in photo-responsive liquid crystal films: a computational
analysis. Soft Matter,
14(12), 2411-2428. https://doi.org/10.1039/c7sm02474f
Zhang,
S., Wang, Y., Lavrijsen, R., Onck, P. R., & den
Toonder, J. M. J. (2018). Versatile microfluidic flow
generated by moulded magnetic artificial cilia.
Sensors and actuators b-Chemical,
263, 614-624. https://doi.org/10.1016/j.snb.2018.01.189
2017
Boonstra,
S., Onck, P. R., & Van der Giessen,
E. (2017). Computation of Hemagglutinin Free Energy
Difference by the Confinement Method. The Journal
of Physical Chemistry. B: Materials, Surfaces, Interfaces, &
Biophysical, 121(50), 11292-11303. https://doi.org/10.1021/acs.jpcb.7b09699
Fuertes,
G., Banterle, N., Ruff, K. M., Chowdhury, A., Mercadante, D.,
Koehler, C., Kachala, M., Estrada Girona, G., Milles, S.,
Mishra, A., Onck, P. R., Gräter, F.,
Esteban-Martín, S., Pappu, R. V., Svergun, D. I., & Lemke,
E. A. (2017). Decoupling of size and shape fluctuations in
heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET
measurements. Proceedings of the National Academy
of Sciences of the United States of America,
114(31), E6342-E6351. https://doi.org/10.1073/pnas.1704692114
Liu,
L., & Onck, P. R. (2017). Enhanced
Deformation of Azobenzene-Modified Liquid Crystal Polymers under
Dual Wavelength Exposure: A Photophysical Model.
Physical Review Letters, 119(5),
Article 057801. https://doi.org/10.1103/PhysRevLett.119.057801
Onck,
P. (2017). Protein Mechanics: From Amino Acid to
Swimming Cells. Procedia IUTAM,
20, 73-80. https://doi.org/10.1016/j.piutam.2017.03.010
2016
Boonstra,
S., Onck, P. R., & van der Giessen,
E. (2016). CHARMM TIP3P Water Model Suppresses Peptide
Folding by Solvating the Unfolded State. The
Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces,
& Biophysical, 120(15), 3692-3698. https://doi.org/10.1021/acs.jpcb.6b01316
Namdeo,
S., & Onck, P. R. (2016). Emergence of
flagellar beating from the collective behavior of individual
ATP-powered dyneins. Physical Review
E, 94(4), Article 042406. https://doi.org/10.1103/PhysRevE.94.042406
Ghavami,
A., van der Giessen, E., & Onck, P.
R. (2016). Energetics of Transport through the Nuclear
Pore Complex. PLoS ONE,
11(2), Article e0148876. https://doi.org/10.1371/journal.pone.0148876
Ghavami,
A., Veenhoff, L. M., Van der Giessen,
E., & Onck, P. R. (2016).
Intrinsically Disordered Proteins: Gatekeepers of the Nuclear
Pore Complex. Biophysical Journal,
110(3, suppl. 1), 358A-358A. https://doi.org/10.1016/j.bpj.2015.11.1930
Blijleven,
J. S., Boonstra, S., Onck, P. R., van der
Giessen, E., & van Oijen, A. M. (2016).
Mechanisms of influenza viral membrane fusion.
Seminars in Cell & Developmental Biology,
60, 78-88. https://doi.org/10.1016/j.semcdb.2016.07.007
2015
Saane,
S. S. R., & Onck, P. R. (2015). Atomistic
modeling of the stiffness, strength and charge-induced actuation of
graphene nanofoams. Extreme Mechanics
Letters, 5, 54-61. https://doi.org/10.1016/j.eml.2015.09.006
Khaderi,
S. N., den Toonder, J. M. J., & Onck, P. R.
(2015). Magnetic Artificial Cilia for Microfluidic
Propulsion. In S. P. A. Bordas, & D. S. Balint (Eds.),
Advances in Applied Mechanics (Vol. 48, pp. 1-78).
Academic Press. https://doi.org/10.1016/bs.aams.2015.10.001
Liu,
D., Liu, L., Onck, P. R., & Broer, D. J. (2015).
Reverse switching of surface roughness in a self-organized
polydomain liquid crystal coating. Proceedings of
the National Academy of Science of the United States of
America, 112(13), 3880-3885. https://doi.org/10.1073/pnas.1419312112
Popken,
P., Ghavami, A., Onck, P. R., Poolman,
B., & Veenhoff, L. M. (2015).
Size-dependent leak of soluble and membrane proteins through
the yeast nuclear pore complex. Molecular Biology
of the Cell, 26(7), 1386-1394. https://doi.org/10.1091/mbc.E14-07-1175
Zagar,
G., Onck, P. R., & van der Giessen,
E. (2015). Two Fundamental Mechanisms Govern the
Stiffening of Cross-linked Networks. Biophysical
Journal, 108(6), 1470-1479. https://doi.org/10.1016/j.bpj.2015.02.015
2014
Flores-Johnson,
E. A., Ming Shen, L., Annabattula, R. K., Onck, P.,
Gen Shen, Y., & Chen, Z. (2014). Finite element modelling
of stress-induced fracture in Ti-Si-N films.
Applied Mechanics and Materials,
553, 10-15. http://dx.doi.org/10.4028/www.scientific.net/AMM.553.10
Saane,
S. S. R., Mangipudi, K. R., Loos, K. U., De
Hosson, J. T. M., & Onck, P. R. (2014).
Multiscale modeling of charge-induced deformation of
nanoporous gold structures. Journal of the
Mechanics and Physics of Solids, 66, 1-15. https://doi.org/10.1016/j.jmps.2014.01.007
Namdeo,
S., Khaderi, S. N., & Onck, P. R. (2014).
Numerical modelling of chirality-induced bi-directional
swimming of artificial flagella. Proceedings of
the Royal Society A-Mathematical Physical and Engineering
Sciences, 470(2162), Article 20130547. https://doi.org/10.1098/rspa.2013.0547
Detsi,
E., Salverda, M., Onck, P. R.,
& De Hosson, J. T. M. (2014). On the localized
surface plasmon resonance modes in nanoporous gold films.
Journal of Applied Physics, 115(4),
044308-1 - 044308-8. Article 044308. https://doi.org/10.1063/1.4862440
Ghavami,
A., Veenhoff, L. M., van der Giessen,
E., & Onck, P. R. (2014). Probing the
Disordered Domain of the Nuclear Pore Complex through
Coarse-Grained Molecular Dynamics Simulations.
Biophysical Journal, 107(6),
1393-1402. https://doi.org/10.1016/j.bpj.2014.07.060
Flores-Johnson,
E. A., Shen, L., Annabattula, R. K., Onck, P. R.,
Shen, Y. G., & Chen, Z. (2014). The effect of interface
adhesion on buckling and cracking of hard thin films.
Applied Physics Letters, 105(16),
Article 161912. https://doi.org/10.1063/1.4900443
2013
den
Toonder, J., & Onck, P. (Eds.) (2013).
Artifical Cilia. RSC publishing. https://doi.org/10.1039/9781849737098
Saane,
S. S. R., De Hosson, J. T. M., & Onck, P.
R. (2013). Atomistic modelling of charge-induced
deformation of gold nanowires. Modelling and
Simulation in Materials Science and Engineering,
21(5), 055024-1-055024-13. Article 055024. https://doi.org/10.1088/0965-0393/21/5/055024
Ghavami,
A., van der Giessen, E., & Onck, P.
R. (2013). Coarse-Grained Potentials for Local
Interactions in Unfolded Proteins. Journal of
Chemical Theory and Computation, 9(1),
432-440. https://doi.org/10.1021/ct300684j
Khaderi,
S., den Toonder, J. M. J., & Onck, P. (2013).
Computational Design of Magnetic Artificial Cilia. In
J. M. J. den Toonder, & P. R. Onck (Eds.), Artificial
Cilia Royal Society of Chemistry.
Detsi,
E., Onck, P. R., & De Hosson, J. T.
M. (2013). Electrochromic artificial muscles based on
nanoporous metal-polymer composites. Applied
Physics Letters, 103(19), 193101-1-193101-3.
Article 193101. https://doi.org/10.1063/1.4827089
Khaderi,
S., Hussong, J., Westerweel, J., den Toonder, J., & Onck,
P. (2013). Fluid propulsion using
magnetically-actuated artificial cilia: Experiments and
simulations. RSC Advances,
3(31), 12735-12742. https://doi.org/10.1039/c3ra42068j
Zhang,
T., Maire, E., Adrien, J., Onck, P. R., & Salvo,
L. (2013). Local Tomography Study of the Fracture of an ERG
Metal Foam. Advanced Engineering
Materials, 15(8), 767-772. https://doi.org/10.1002/adem.201300004
Detsi,
E., Onck, P., & De Hosson, J. T. M.
(2013). Metallic Muscles at Work: High Rate Actuation in
Nanoporous Gold/Polyaniline Composites. Acs
Nano, 7(5), 4299-4306. https://doi.org/10.1021/nn400803x
den
Toonder, J. M. J., & Onck, P. R. (2013).
Microfluidic manipulation with artificial/bioinspired
cilia. Trends in Biotechnology,
31(2), 85-91. https://doi.org/10.1016/j.tibtech.2012.11.005
Zinchenko,
O., De Raedt, H. A., Detsi, E., Onck, P.
R., & De Hosson, J. T. M. (2013).
Nanoporous gold formation by dealloying: A Metropolis Monte
Carlo study. Computer Physics
Communications, 184(6), 1562-1569. https://doi.org/10.1016/j.cpc.2013.02.004
Detsi,
E., Selles, M. S., Onck, P. R., & De Hosson,
J. T. M. (2013). Nanoporous silver as electrochemical
actuator. Scripta Materialia,
69(2), 195-198. https://doi.org/10.1016/j.scriptamat.2013.04.003
Namdeo,
S., Khaderi, S. N., & Onck, P. R. (2013).
Swimming dynamics of bidirectional artificial
flagella. Physical Review E,
88(4), 043013-1-043013-11. Article 043013. https://doi.org/10.1103/PhysRevE.88.043013
Ghavami,
A., Van der Giessen, E., & Onck, P.
R. (2013). Towards a Coarse-Grained Model for Unfolded
Proteins. In G. A. Holzapfel, & E. Kuhl (Eds.),
Computer Models in Biomechanics: From Nano to Macro (pp.
3-10). (Computer Models in Biomechanics). Springer.
Last modified: | 09 June 2023 8.36 p.m. |